Have a look at this video, it should give you a better understanding of the prime start system on your engine. My guess is that #2 is flooding. Do you have a Yamaha shop manual for your engine?
https://youtu.be/x35uqVMu2r0
Edit
Looks like you already seen that.
https://youtu.be/x35uqVMu2r0
Edit
Looks like you already seen that.
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